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Proteins are the machinery of living tissue that builds the structures and carries out the chemical reactions necessary for life.
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If you search the scientific literature on evolution, and if you focus your search on the question of how molecular machines - the basis of life - developed, you find an eerie and complete silence. The complexity of life's foundation has paralyzed science's attempt to account for it; molecular machines raise an as-yet-impenetrable barrier to Darwinism's universal reach.
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Despite some remaining puzzles, there's no reason to doubt that Darwin had this point right, that all creatures on earth are biological relatives
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The theory of undirected evolution is already dead, but the work of science continues.
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There is no publication in the scientific literature - in prestigious journals, specialty journals, or books - that describes how molecular evolution of any real, complex biochemical system either did occur or even might have occurred.
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The conclusion of intelligent design flows naturally from the data itself - not from sacred books or sectarian beliefs. Inferring that biochemical systems were designed by an intelligent agent is a humdrum process that requires no new principles of logic or science. It comes simply from the hard work that biochemistry has done over the past forty years, combined with consideration of the way in which we reach conclusions of design every day.
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Since natural selection requires a function to select, an irreducibly complex biological system, if there is such a thing, would have to arise as an integrated unit for natural selection to have anything to act on.
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Science is not a game in which arbitrary rules are used to decide what explanations are to be permitted.
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We can look high or we can look low in books or in journals, but the result is the same. The scientific literature has no answers to the question of the origin of the immune system.
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Throughout history there have been many other examples, similar to that of Haeckel, Huxley and the cell, where a key piece of a particular scientific puzzle was beyond the understanding of the age.
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Although Darwin was able to persuade much of the world that a modern eye could be produced gradually from a much simpler structure, he did not even attempt to explain how the simple light sensitive spot that was his starting point actually worked.
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It is a shock to us in the twentieth century to discover, from observations science has made, that the fundamental mechanisms of life cannot be ascribed to natural selection, and therefore were designed. But we must deal with our shock as best we can and go on.
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In private many scientists admit that science has no explanation for the beginning of life... Darwin never imagined the exquisitely profound complexity that exists even at the most basic levels of life.
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In order to say that some function is understood, every relevant step in the process must be elucidated.
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We are not inferring design to account for a black box, but to account for an open box.
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It was only about sixty years ago that the expansion of the universe was first observed.
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Thus it seemed to Haeckel that such simple life could easily be produced from inanimate material.
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The conclusion of design flows naturally from the data; we should not shrink from it; we should embrace it and build on it.
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Many people, including many important and well-respected scientists, just don't want there to be anything beyond nature. They don't want a supernatural being to affect nature.
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The trap does not work until all the parts were there. The system itself doesn't work until you fit all of them together.